Bioinformatic Random Seed

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Alignment

Last update: 06/05/2020
By: Huitian (Yolanda) Diao

Tools

  1. Cellranger count (STAR)

  2. Kallisto bustools

  3. Salmon alevin

Benchmark

  1. Du, Yuheng, et al. “Evaluation of STAR and Kallisto on Single Cell RNA-Seq Data Alignment.” G3: Genes, Genomes, Genetics 10.5 (2020): 1775-1783.
  2. Srivastava, Avi, et al. “Alevin efficiently estimates accurate gene abundances from dscRNA-seq data.” Genome biology 20.1 (2019): 65.