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Batch Effect Removal

Last update: 05/14/2020
By: Huitian (Yolanda) Diao

Packages

1. <2020>Cluster similarity spectrum integration of single-cell genomics data
   Publisher: bioRxiv | Group: Barbara Treutlein | Institute: ETH
2. <2019>Fast, sensitive and accurate integration of single-cell data with Harmony
   Publisher: NAT METHODS | Group: Soumya Raychaudhuri | Institute: Harvard
3. <2018>Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
   Publisher: NAT BIOTECH | Group: John C. Marioni | Institute: EBI

Metrics

kBET, LISI, ASW, ARI, DEG

Benchmarks

1. <2020>A benchmark of batch-effect correction methods for single-cell RNA sequencing data
   Publisher: GENOME BIOL | Group: Jinmiao Chen | Institute: Singapore Immunology Network